Introduction to Course and to Linear Modeling
  • Introduction to Course
  • Preliminaries: Installing R, RStudio, R Commander, Course Materials and Exercise
  • Beginning Agenda (slides)
  • What is Linear Modeling? (slides, part 1)
  • Assumptions of Linear Modeling (slides, part 2)
  • Desirable Properties of Beta-hat (slides, part 3)
  • Example: Estimate Age of Universe (slides)
  • Example: Estimate Age of Universe Live in R (part 1)
  • Example: Estimate Age of Universe Live in R (part 2)
  • Example: Estimating Age of the Universe (part 3)
  • Finish Example and More Notes on Linear Modeling
  • Linear Modeling Exercises
Generalized Linear Models (GLMs) Part 1
  • Introduction to GLMs (slides, part 1)
  • Introduction to GLMs (slides, part 2)
  • Introduction to GLMs (slides, part 3)
  • Introduction to GLMs (slides, part 4)
  • Example: Binomial (Proportion) Model with Heart Disease (part 1)
  • Example: Binomial (Proportion) Model with Heart Disease (part 2)
  • Example: Binomial (Proportion) Model with Heart Disease (part 3)
  • Example: Binomial (Proportion) Model with Heart Disease (part 4)
  • GLM Exercises
Generalized Linear Models Part 2
  • Current Agenda
  • Linear Regression Exercise Solutions (part 1)
  • Linear Regression Exercise Solutions (part 2)
  • GLM Exercise Solutions (part 3)
  • Example: Poisson Model with Count Data (part 1)
  • Example: Poisson Model with Count Data (part 2)
  • Example: Binary Response Variable (part 1)
  • Example: Binary Response Variable (part 2)
  • Exercise: GLM to GAM
  • Example: Log-Linear Model for Categorical Data
  • More on Deviance and Overdispersion (slides)
Generalized Additive Models Explained
  • What are GAMS? (Crawley, slides, part 1)
  • What are GAMs? (Crawley, slides, part 2)
  • Demonstrate GAM Ozone Data (part 1)
  • Demonstrate GAM Ozone Data (part 2)
  • General Approaches for Fitting GAMs (slides)
  • What are GAMs? (Wood, slides, part 1)
  • Univariate Polynomial GAMs (Wood, slides, part 2)
  • Univariate Polynomial GAMs (Wood, slides, part 3)
  • GAMs as 4th Order Polynomials (slides, part 1)
  • GAMs as 4th Order Polynomials (slides, part 2)
  • GAMs as Regression Splines (slides)
  • Cubic Splines (slides, part 1)
  • Cubic Splines (slides, part 2)
  • Function to Establish Basis for Spline (slides)
  • Build-a-GAM (slides, part 1)
  • Build-a-GAM (slides, part 2)
  • Build-a-GAM (slides, part 3)
  • Build-a-GAM Demonstration in R Script
  • Build-a-GAM Cross Validation
  • Bivariate GAMs with 2 Explanatory Independent Variables (slides, part 1)
  • Bivariate GAMs with 2 Explanatory Independent Variables (slides, part 2)
  • Exercises
Detailed GAM Examples
  • Current Agenda (slides)
  • Cherry Trees and Finer Control (slides, part 1)
  • Finer Control of GAM (slides, part 2)
  • Using Smoothers with More than One Predictor (slides)
  • More on Alternative Smoothing Bases (slides)
  • Parametric Model Terms (slides)
  • Example: Brain Imaging (part 1)
  • Example: Brain Imaging (part 2)
  • Example: Brain Imaging (part 3)
  • Example: Brain Imaging (part 4)
  • Example: Brain Imaging (part 5)
  • Example: Air Pollution in Chicago (part 1)
  • Example: Air Pollution in Chicago (part 2)
  • Air Pollution in Chicago (part 3)
  • More Exercises